CDS

Accession Number TCMCG015C25378
gbkey CDS
Protein Id XP_027123878.1
Location complement(join(20789524..20790291,20790374..20790524,20791541..20792525,20792528..20793004,20793007..20793442,20795506..20795695,20795697..20795822,20795824..20796041))
Gene LOC113740447
GeneID 113740447
Organism Coffea arabica

Protein

Length 1120aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027268077.1
Definition LOW QUALITY PROTEIN: RNA-dependent RNA polymerase 2-like [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category H
Description Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11699        [VIEW IN KEGG]
EC 2.7.7.48        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006342        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009620        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010495        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031048        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045814        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050832        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0070919        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCTGTGGAAGAGAGAACCACGGCAACAGTGAGAGTCCAGAACATACCCCAATCAGCCAATGCCAAGGACCTCTTAGCTTTCTTTCAATCAACAATCGGAGAAGATACAGTCTTTGCTATTGAAATCTTCTCAGAGCACAAAAATTGGAAGTCCAGAGGTCATGGGAAAGTCCAGTTTGAGACCCTTGAAGCCAAGATCAAATGTCTATCTTTATCGAAAAAGGAACTTTTCTTCAAAGGGTCTCATCTGAGGTTATCACATTCAATTGATGAGGTGATCTTCAGGCCGGTTGACTCCAAGCTTAGGATTAAGAATGGGGTTTTGCGTACGGGGATTTTTGAAAATGATTGCATGTCTGTTTTGGAGAGGTGGGATGGTGTTAAAGTTTGGATTATGCCTGAAAGGAATATTCTTGAGTTTTGGTTGAGTCATGGTGGCGAGTGTTATAAGCTGGAAGTACAGTTTGGTGATGTCTTGGAGAGCTGTGGGTGCTGTTTGGATGACCAGAATCCCAATGCAGTTCTTCTAAAGCTTAAACATGCGCCAAAAATATACCAAAAATTTTCTGGACCCAATGTTGCTGCAAAATTCAGTGCTGATAGGTATCATACTTGCAAGGAGGATTTTGACTTCATCTGGGTTCGTACAACTGACTTTTCCAGTATAAAGTCAATTGGATATTCATCATCGCTTTGTTTGGAAATTGAGGAAGGGTTGTCAGGATTGGACTTGTTCACCAATCTGCCGTACTGCAGTAGGTTTTTCTTAGAACTAACTCTGGAAGAAGGAGAACAGTTTTCCACCACATCTGAGCTAGTTCCACTAGTGAAATGTTGTTCAGATATCAAAATTACATATGAGATCCTTTTCCAGCTTAATTCCCTGGTTCATACCCAAAAGCTTAGTCTTGGTGCAGTCAACAGTGAGTTGATGGAGGTGCTTAGTGGTTTAGACATGGATATTGCGACAATTCTTCAGAAAATGCATAAGCTGGAGACTATGTGTTATGATCCTGTGTCATTCATCAACAAGAGGTTACATGTTATGGGTGAAAATGCTAGCAATCTTCGTTCATCATCTTATGGTCGGCCAAAAAATAATAACATGATGACTTGTCATAGAGTGCTTGTAACACCATCAAAAGTCTACTGCTTGGGTCCTGAACTGGAAACCTCAAACTACATCGTGAAGAACTTTGCTTCATATGCTTCGGATTTCTTGAGAGTAACTTTTGTTGAAGAAGACTGGGGTAAACTTTCTCCTAGTGTTGTAAATACAAGTTTTGGGAGAGGTTTGTTTGCCAAGAATTACAAAACAAACATCTATCACAGAATCTTGTCAATCCTCAAAGATGGGATTGTCATTGGTGAGAAACGATTCCTTTTCCTGGCCTTTTCAGCTAGTCAACTGCGCTCCAATTCAGTTTGGATGTTTGCTTCTAATGATTTGAGAGCAGAGGATATAAGAGACTGGATGGGCTGCTTCAACAAGATCCGAAGCGTGTCAAAATGTGCTGCAAGAATGGGTCAGCTTTTCAGCTCCTCTTTGCAAACTCTAGAAGTACCACCTCAGCAAGTTGAGGTTATTCCTGATATAGAAATGACTACTGATGGAGAGAACTATTGCTTCTCAGATGGTATTGGAAAGATTTCCCAAGGTTTTGCTAGACAGGTTGCCCAAAAGTGTGGATTAAATTATACCCCCTCAGCATTTCAAATACGCTATGGAGGCTATAAAGGTGTGATAGCTGTTGACCGATACTCCTTCAGGAAGCTTTCTTTACGTAGTAGTATGCTTAAATTTGAATCAAAAAACAGGATGCTAAATGTCACCAAGTGGAGTGAGGCCATGCCTTGCTATCTAAATCGGGAGATTATTACCCTTTTGTCTACCTTGGGTGTAGAGGACCAAGTTTTTCTGGCAATGCAATATGAGCAACTACATCTGCTGGACAAGATGTTGACACATCGAGAGGCAGCATTAGATGTTCTAGCAAGCATGGGTGTGAATGAGACAAAAAGCATTGTAGTTAGAATGTTGCGTCAAGGTTTTGAGCCTGAAATAGAGCCTTATCTTTCAATGATACTTCAGTCTCATCGTGAAAACCAGCTTTCTGATTTAAGAAGCAGGTGCCGCATATTTGTTCCCAAGGGTCGGGTCCTCCTAGGGTGCCTAGATGAAACAGGAATTTTGGACTATGGACAGGTTTATATCCGTATAACCATGACTAAGACTGAGTTACAAATTGGTGAACAGTGTTTCTTTCAGAAGGTGGATGAGACAACAGCGATAGTTAAAGGGAAGGTTGTAGTGACGAAGAACCCGTGTCTTCACCCAGGGGATGTTAGGGTCCTTGAGGCTGTTTATGAGTTCTCTTTACAGGAAAGGGGTATGGTGGATTGCATTTTATTTCCCTTGAAGGGTGTAAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGTGACTTGTATTTTGTGAGCTGGGATGAAAATCTCATCCCCTTTCAAACAGTGACACCCATGGATTACATTGATCGTAGAAAGCGTATTGTGGATCATGATGTCACCTTAGAGGAAATTCAAAGTTTTTTCGTTGATTACATGATCAGTGATACCCTGGGCACCATCTCTACTGCTCATCTGATACATGCAGATCGTGAACCAGATAAAGCTTTGAGTCCAAAATGTCTTCAGTTAGCTACACTGCATTCTATGGCTGTTGATTTTGCAAAAACAGGGACTCCAGCTGAGATGCCTAGGTTTTTGAAACCTAGAGAGTTTCCAGATTTTATGGAAAGGTGGGACAAACCTATGTATACGTCACAAGGAGCTTTGGGTAAACTTTACCGTGCCACGATTGCATCTAGAGTTCCTGGGAAGTCAAGCTTTGTTTTCTCAGCCAAGATTGTCCAAGACGCTTATGATGATGAGCTTCTGATTGACGGTTATGAGTACTTCCTTGGAACTGCTCAATGTCACAAAGAGATGTACGTGGACAAAATCAGCACCTTGCTGACCTATTATGGAGCAGAGACTGAAGAGGAGATACTGACTGGAAACTTGCGTAATAAGTCGATGTATTTGCAACGGGACAATAGGCGTTACTTTGAATTGAAAGACCGCATCTTAGTGGCTATCAAAAGCCTGCAGAAGGAGGCTAGAAGTTGGTTTGAGAGCAGTTGCAGAGCAGCCGAGCAAATGAAACTGGCATCAGCATGGTATCATGTCACCTACCATCCAACATATTCCGAAGGAAGTGCTAAGTGCTTGGGCTTTCCATGGATTGTGGGTGATATTCTGCTGGACATTAAGTCAATGAATAGCAGAAAGGTTTGTTCTTAA
Protein:  
MAVEERTTATVRVQNIPQSANAKDLLAFFQSTIGEDTVFAIEIFSEHKNWKSRGHGKVQFETLEAKIKCLSLSXKKELFFKGSHLRLSHSIDEVIFRPVDSKLRIKNGVLRTGIFEXNDCMSVLERWDGVKVWIMPERNILEFWLSHGGECYKLEVQFGDVLESCGCCLDDQNPNAVLLKLKHAPKIYQKFSGPNVAAKFSADRYHTCKEDFDFIWVRTTDFSSIKSIGYSSSLCLEIEEGLSGLDLFTNLPYCSRFFLELTLEEGEQFSTTSELVPLVKCCSDIKITYEILFQLNSLVHTQKLSLGAVNSELMEVLSGLDMDIAMXILQKMHKLETMCYDPVSFINKRLHVMGENASNLRSSSYGRPKNNNMMTCHRVLVTPSKVYCLGPELETSNYIVKNFASYASDFLRVTFVEEDWGKLSPSVVNTSFGRGLFAKNYKTNIYHRILSILKDGIVIGEKRFLFLAFSASQLRSNSVWMFASNEXLRAEDIRDWMGCFNKIRSVSKCAARMGQLFSSSLQTLEVPPQQVEVIPDIEMTTDGENYCFSDGIGKISQGFARQVAQKCGLNYTPSAFQIRYGGYKGVIAVDRYSFRKLSLRSSMLKFESKNRMLNVTKWSEAMPCYLNREIITLLSTLGVEDQVFLAMQYEQLHLLDKMLTHREAALDVLASMGVNETKSIVVRMLRQGFEPEIEPYLSMILQSHRENQLSDLRSRCRIFVPKGRVLLGCLDETGILDYGQVYIRITMTKTELQIGEQCFFQKVDETTAIVKGKVVVTKNPCLHPGDVRVLEAVYEFSLQERGMVDCILFPLKGVRPHPNECSGGDLDGDLYFVSWDENLIPFQTVTPMDYIDRRKRIVDHDVTLEEIQSFFVDYMISDTLGTISTAHLIHADREPDKALSPKCLQLATLHSMAVDFAKTGTPAEMPRFLKPREFPDFMERWDKPMYTSQGALGKLYRATIASRVPGKSSFVFSAKIVQDAYDDELLIDGYEYFLGTAQCHKEMYVDKISTLLTYYGAETEEEILTGNLRNKSMYLQRDNRRYFELKDRILVAIKSLQKEARSWFESSCRAAEQMKLASAWYHVTYHPTYSEGSAKCLGFPWIVGDILLDIKSMNSRKVCS